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These pumpkin cream cheese cookies are the best fall cookie recipe you’ll ever try! Made with pumpkin puree and pumpkin pie spices, these thumbprint cookies are topped with homemade cream cheese frosting and dusted with cinnamon. Ready in just 40 minutes – no chill time required!

These delicious cookies are perfect all through the holiday season, from Thanksgiving to Christmas! Everything is made from scratch, but what makes this recipe easier than others is the thumbprint center for the cream cheese frosting – perfect for beginner bakers and holds the frosting so much better than just brushing it on top.
Everyone will love these soft pumpkin cookies for a dessert or tailgate party. And if you have leftover pumpkin you can use it for these pumpkin jumbo muffins or pumpkin sage pasta.
Table of Contents
Easy Pumpkin Cookies with Cream Cheese Frosting
- Easy to make – It’s easy to make and fun for the family on a chilly or rainy day. Ready in 40 minutes, no chill time,
- Not too sweet – These cookies are soft and cakey, plus not overly sweet, even with the cream cheese filling..
- Freezes well – These are excellent for prepping ahead as they freeze and defrost well.
- No rolling or chilling – Unlike other cookie recipes, these skip any extra steps. Just bake and frost.
- Thumbprint cookies – Because these use a simple thumbprint technique for the cheesecake filling, these are lot easier to make for beginner cooks or kids. They also transport much better than the frosted all over kind, making them perfect for parties or gifts.
Ingredients

Here are some details on the main ingredients with amounts in the recipe card below.
- Flour – I like to use an all purpose flour without malted barley. King Arthur Whole Wheat, Bob’s Red Mill Organic, Arrowhead Mills, White Wings, and Gold Medal are some brands I tend to buy.
- Pumpkin puree – I have found that regular pumpkin puree often tastes and bakes better than organic. This is especially true with my pumpkin apple bread. Organic brands tend to have a lot more water and less flavor, whereas ones like Libby are a deep orange color. You could also use homemade pumpkin puree, just be aware that they all may give you different textures and flavors! Do not use pumpkin pie filling.
- Sugar – This recipe uses 3 kinds of sugar – regular white cane sugar, light brown sugar, and powdered sugar for the cheesecake filling.
- Spices – Warm spices of cinnamon, nutmeg, cloves, and ginger all add perfect seasonal fall flavors to the recipe. I prefer to add these all separately as pumpkin pie spice tends to vary by brand.
- Vanilla – Any kind of vanilla extract will work. I tend to use the Trader Joe’s alcohol free vanilla.
- Cream Cheese – Philadelphia brand in the plain block form works for this recipe, as well as Publix Greenwise. You just want to avoid anything with carrageenan or any cream cheese in a tub.
- Butter – Good butter makes a difference! I love Kerrygold and get a great deal on it at Costco or Trader Joe’s. Make sure this is at room temperature by leaving it on the counter an hour before you start baking. You want it to be soft, not melted.
Recipe Substitutions
- Cream cheese – Mascarpone cheese can be used as a substitute.
- Gluten free – I have not tried these with gluten free flour myself, several readers have reported success using an all purpose 1:1 gluten free flour like Bob’s red mill.
- Dairy free – You could make this dairy free by using your favorite dairy free substitutes for cream cheese and butter.
- Egg free – For an egg substitute, I would recommend using 1/4 cup of applesauce.
How to Make

For the pumpkin cookies
- Mix together wet ingredients. In a large bowl or mixer bowl, add room temperature butter and sugar and blend on medium-high speed till light and fluffy.
- Stir in egg, pumpkin and vanilla or mix on low. It’s ok if the mixture looks a little bit grainy (this can happen if your pumpkin puree is a little cold, which mine was). It all turns out when you bake it.
- Mix together dry ingredients. Preheat oven to 350 degrees F. Begin by mixing the dry ingredients together – flour, baking soda, baking powder, salt, and spices.
- Combine the wet and dry. Slowly stir in the dry ingredients to the butter/pumpkin mixture until just combined. Don’t overmix.

Cream Cheese Frosting
- Make the pumpkin cookies. Using a spoon, scoop out a drop of pumpkin cookie dough onto a prepared sheet pan covered with a silpat or parchment paper. Use the back of the spoon (or finger) to create a nice “mound”. Bake at 350F for 13-15 minutes, until lightly brown around the edges. Cool on the baking sheet for at least 5 minutes.
- Make the thumbprint. While still warm, use your finger to make a small divot in the cookie for the cream cheese filling.
- Make the cream cheese filling. In a mixing bowl, whisk together room temperature butter, cream cheese, and vanilla. Slowly add in powdered sugar, a little bit at a time, till desired thickness (and sweetness) is reached.
- Make the pumpkin cream cheese cookies. While still at room temperature, add a dollop of cheesecake filling inside of each cookie and then sprinkle with cinnamon on top.
Recipe Tips
- Use room temperature ingredients – Everything from the butter to the pumpkin puree, to cream cheese is better blended at room temperature.
- Scoop and level – Measure the flour by scooping it into a measure cup with a spoon, then level the top with a knife. Do not directly scoop the measuring cup into the flour.
- Cool before filling – Make the thumbprint indention while still warm, but completely cool these pumpkin cream cheese cookies before filling them.
- The cheesecake filling will harden if you put it in the fridge so if you do this step ahead, you need to leave out at room temperature again before filling the cookies so it’s easier to work with.

Storage Suggestions
Because these pumpkin cream cheese cookies involve butter and cream cheese, which should be refrigerated for storage, you have three preparation options.
- Fill the cookies right away and consume them immediately.
- Fill the cookies right away and store the whole cookie in the fridge or freezer.
- Keep the cookies out and store the frosting until you’re ready to serve.
Refrigerator – If storing in the fridge, the cookies can dry out after a day or two, so just be aware of that.
Freezer – I recommend defrosting by leaving out at room temperature. They should be soft within an hour or two. These cookies will store well in the freezer for up to 3 months.
Frequently Asked Questions
Yes! Just frost the whole cookie without making the thumbprint center. For those looking for a less sweet version, I encourage the thumbprint cream cheese center as it uses less frosting and is less sweet overall, plus it travels better for parties.
For a big party, you can wait to frost them till you arrive. Transporting with the frosting already filled can make things messy and it’s hard to carry everything in one layer. Just keep the cookies and frosting separate for easy carrying.

Pumpkin Puree Recipes
Breakfast
Jumbo Pumpkin Muffins (Bakery-Style)
Recipes
Pumpkin Apple Bread
Love this recipe? Please leave a 5-star 🌟🌟🌟🌟🌟 review in the recipe card! Don’t forget to tag me @thedizzycook on Facebook and Instagram, and follow along on Pinterest for more great recipes!

Pumpkin Cream Cheese Cookies
Ingredients
Pumpkin Cookies
- 10 tablespoons unsalted butter, softened at room temperature, * to soften, take butter out of the fridge and leave it on the counter for an hour or so before you plan to start baking. Do not heat butter to soften it.
- 3/4 cup white sugar
- 1/2 cup light brown sugar, packed
- 1 cup canned pumpkin puree (no spices added)
- 1 large egg
- 2 cups all-purpose flour
- 1 teaspoon baking soda
- 1/2 teaspoon baking powder
- 3/4 teaspoon salt
- 1.5 teaspoon ground cinnamon
- 1/2 teaspoon ground ginger
- 1/2 teaspoon ground nutmeg
- 1/8 teaspoon ground cloves
- 1 teaspoon vanilla extract
Cheesecake Filling
- 5 tablespoons unsalted butter, softened at room temperature
- 4 oz block-style cream cheese, softened at room temperature
- 2 cups powdered sugar
- 1/2 teaspoon vanilla
- cinnamon for decoration
Instructions
- Preheat oven to 350 degrees F. If you have silicone baking mats, line two baking sheets with them. Otherwise, line each baking sheet with parchment paper.
- In a large mixing bowl add butter and sugars and mix on medium-high speed till light and fluffy. Add egg, pumpkin and vanilla, mixing on low speed till just combined.
- In a medium mixing bowl combine flour, baking soda, baking powder, salt, cinnamon, nutmeg, ginger and cloves and stir to combine. Slowly add dry ingredients into the large mixing bowl with wet ingredients and continue mixing on low speed until all ingredients are well combined. Do not overmix.
- Scoop dough out using a spoon or 1 1/2 tablespoon cookie scoop (filling it just slightly heaping). Drop onto prepared baking sheet spacing cookies about 2-inches apart. Bake one sheet at a time at 350 degrees F for 13-15 minutes, till just brown around the edges. Leave on the baking sheet and make an indent in the center of the cookie with your thumb while still warm. Transfer to a wire rack to cool completely.
- Meanwhile in a medium mixing bowl add soft butter, room temperature cream cheese, and vanilla. Blend with an electric mixer till light and fluffy. Slowly add in powdered sugar and continue mixing until it looks smooth. This is better kept at room temperature to spread on the cookies otherwise it will be too hard to frost them well. You can always put in the fridge to store and then wait for it to come to room temp.
- Once cookies have cooled slightly (about 15 minutes), add the cream cheese filling to the center indent and sprinkle with brown sugar. Store in an airtight container (in single layers divided by wax paper) in refrigerator (see more storage suggestions in post). Bring cookies back to room temperature before serving.
Video
Notes
- Avoid organic pumpkin puree if you can – I prefer to use Libby’s or another regular brand as it’s more flavorful and less watery, which can affect the texture of your cookies.
- Store these in an airtight container with parchment in between layers. You can also freeze these and defrost at room temperature for about 1 hour.
- Philadelphia cream cheese, organic valley, and publix greenwise are all good brands for cream cheese. Make sure you buy it in block form and not a tub.
- You may not use all the frosting (I usually have approximately 1/4 cup left), so store it in a small bowl or bag and keep in the freezer for up to 3 months. It’s best to freeze the pumpkin cookies and cream cheese frosting separately, then frost when ready to serve.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.
















Made these gluten free by substituting 1 cup oat flour and 1 cup brown rice flour. Decreased baking temp to 325 and baked for around 22-30 min (sorry didn’t time it). Turned out great! They fell apart a little which I think is because they were GF and I made them a little on the big side so if I made them GF again I would keep them on the smaller side.
Thank you, Nora!! So helpful!
My hubby and I made these today. Oh. My. Giddy. Aunt. Just the treat for a beautiful fall day in Canada. 🇨🇦 Being dizzy is not so bad when you have such delicious treats to enjoy. Cheers Alicia. – Margi
Light and airy, with delicious frosting! One of the best cookie recipes I’ve ever made!
It’s embarrasing how many times I’ve made these already! They are absolutely delicious. So soft and not too sweet!
This looks great! What would you use to make it gluten free?
Hey Debi! I think a good gluten free all purpose would work, like this one. It does have xanthan gum, but it might be too small to create an issue I know Jenn has a lot of luck using half brown rice flour and half oat flour, but we have not tested it with this recipe. If you try it let us know how it goes!
Hi Debi,
I know it’s been a while since you posted this but I just made these GF so wanted to share my experience with you! I copied and pasted my review below:
Made these gluten free by substituting 1 cup oat flour and 1 cup brown rice flour. Decreased baking temp to 325 and baked for around 22-30 min (sorry didn’t time it). Turned out great! They fell apart a little which I think is because they were GF and I made them a little on the big side so if I made them GF again I would keep them on the smaller side.
I was one of those who tried these at the tailgate Alicia mentioned. Couldn’t hardly quit eating them. I love pumpkin anything (but coffee). We brought home a bunch and my wife tried to freeze them (which didn’t hurt the taste at all), but they didn’t last long once I found them.
haha!
Oh man these were amazing! Just made them this evening and they are perfection. My husband, who has every few treats because of migraine diet, especially loves them. Fall perfection. It’s like a cake consistency but a cookie. Thanks!
I’m so glad you love them as much as we do, Brittany!