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This pepita crusted salmon recipe is fast and easy with minimal ingredients. Fresh salmon fillet is topped with dijon mustard, and coated in crushed pumpkin seeds for a delicious healthy salmon salmon!

Baked crusted salmon is the perfect alternative for those who cannot use pecans or nuts, but still packs a ton of flavor. Pumpkin seeds are full of nutrients that are optimal for brain health like magnesium, a natural source of tryptophan, and antioxidants.

Don’t skip serving this with delicious side dishes like roasted mashed cauliflower or a burrata salad.

A fork with a bite of salmon next to a salad.

Pepita Crusted Salmon

Finding a fish recipe that’s not nut-crusted in some way is really challenging! Since it’s one of my personal migraine triggers, I started experimenting with seed crusted salmon recipes.

This recipe is so quick and easy, it’s perfect for a weeknight meal. Pepitas, which are shelled pumpkin seeds, are lightly toasted and ground with a little bit of garlic. They provide a perfect crunch to the buttery salmon and pair so well with dijon. You’ll love this recipe because:

  • Great for brain health – Pumpkin seeds are high in magnesium as well as healthy fats, fiber, and have anti-inflammatory properities.
  • Fits lots of diets – This pepita crusted salmon is migraine diet friendly, Whole30, paleo, low carb, and low sodium.
  • 20 minute meal – One of my favorite quick and easy recipes!

Ingredients

Salmon next to dijon mustard and spices.
  • Salmon – Choose a center-cut, even piece or have the fishmonger cut it into individual portions for you. Farmed salmon usually has a lighter, more buttery flavor where wild salmon has a stronger, more fishy flavor. Generally I prefer the taste of farmed, but the health benefits are greater with wild salmon. A good compromise is finding sustainably farmed salmon, like Verlasso or Fish Fixe.
  • Garlic – Highly recommend fresh over dried for this recipe.
  • Dijon mustard – Use one without wine or sulfites if following a migraine diet.
  • Pepitas – These are just a type of pumpkin seed without the shell. You can buy them p unsalted and pre-roasted, which will cut out an extra step here.
  • Sumac – Sumac is a tangy spice that’s used in Mediterranean cooking. It adds a lemony flavor without using lemon. If you cannot locate it, omit it from the recipe or try another favorite spice like paprika.

How to Make Baked Crusted Salmon

Step by step process for making a baked crusted salmon.

This pepita crusted salmon is ready in just a few easy steps. Start by preheating the oven to 400 degrees Fahrenheit.

  1. Toast the pepitas – If you cannot locate pre-roasted, unsalted pepitas, you can toast them easily in the oven or a dry pan over medium low heat.
  2. Prepare the salmon – Add toasted pepitas to a small food processor (or chop them very small with a chefs knife), and combine with garlic and sumac. Pat the salmon fillets dry and place them on a baking sheet covered with parchment. Spread the tops of the fillets with dijon, then sprinkle on the pepita mixture.
  3. Bake – Bake at 400 degrees Fahrenheit for about 15-20 minutes, or until the salmon has cooked through to your liking. Smaller, thinner fillets will take less time to cook.

Substitutions

While I think these flavors are best with salmon, here are a few substitution ideas.
Salmon – Can be replaced with halibut.
Pumpkin seeds – Can be replaced for sesame seeds or sunflower seeds.
Sumac – Substitute lemon juice if not following a migraine diet.

Storage Instructions

Crusted baked salmon will store well in the refrigerator for up to 2 days. I do not recommend freezing, especially since most salmon has been previously frozen.

Reheat in the microwave or gently warm in the oven.

Salmon crusted with pepita seeds with a salad on a plate.

Serving Suggestions

Typically I serve this recipe with a base that’s soft and creamy plus a salad or roasted vegetable. Some ideas are:

Salmon fillets topped with pepita seeds on a baking sheet.

Healthy Salmon Recipes

For more healthy salmon recipes like this pepita crusted salmon, check out these posts. And don’t miss this sheet pan salmon and green beans.

HDHeal Your Headache (HYH)MDMediterranean Migraine DietDFDairy FreeGFGluten FreeHPHigh ProteinLCLow Carb

Spicy Salmon Bowl

Love this recipe? Please leave a 5-star 🌟🌟🌟🌟🌟 review in the recipe card! Don’t forget to tag me @thedizzycook on Facebook and Instagram, and follow along on Pinterest for more great recipes!

Three fillets of pepita crusted salmon on a baking sheet.
5 from 7 votes
Servings: 2 people

Pepita Crusted Salmon

This recipe has it all! It’s simple with minimal ingredients and you can make it in about 30 minutes total. Nut free and allergy friendly, your family will love this one. Serve with a simple salad and mashed cauliflower, potatoes, or parsnips. 
Prep: 10 minutes
Cook: 20 minutes
Total: 30 minutes
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Ingredients 

  • 1 pound salmon fillets
  • 1 small garlic clove, peeled and minced
  • 1/3 cup pepitas
  • tablespoons dijon mustard
  • 1/8 teaspoon ground sumac
  • 1/4 teaspoon kosher salt and black pepper

Instructions 

  • Preheat oven to 400 degrees Fahrenheit and pat salmon fillets dry on each side, then place them on a baking sheet (I use parchment paper underneath for easy clean up). In a small pan, add pepitas in a single layer. Toast over medium heat until lightly browned, about 1-2 minutes or toast in the oven while pre-heating. Remove from heat and roughly chop or pulse in a small food processor till it forms into small crumbs. 
  • Add chopped pepitas with minced garlic and sumac, and stir to combine. Sprinkle salmon with salt and pepper and then spread dijon mustard on top of each filet. Gently press the pepita mixture on top of each salmon. The dijon should hold most of the topping. 
  • Bake for 15-20 minutes at 400 degrees F, depending on the size of your salmon fillet. Mine was about 1½" and took 18-20 minutes for medium. Serve immediately. 

Notes

  • This really serves 2-3 people depending on how large you like your fillets to be.
  • For those on a migraine diet, look for sulfite-free/wine-free dijon mustard like Annie’s Naturals. 
  • Pepitas are a type of pumpkin seed that you can find pre-roasted and unsalted. If you do, you can skip roasting it in the oven or pan. 

Nutrition

Serving: 1piece, Calories: 391kcal, Carbohydrates: 2g, Protein: 49g, Fat: 20g, Saturated Fat: 3g, Cholesterol: 125mg, Sodium: 228mg, Potassium: 1198mg, Fiber: 1g, Sugar: 1g, Vitamin A: 91IU, Vitamin C: 1mg, Calcium: 34mg, Iron: 3mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Like this? Leave a comment below!

This post was originally published October 18, 2018 and has been updated February 2023 with new photos, tips, and serving suggestions.

Alicia

Alicia is a vestibular migraine advocate and the bestselling author of The Dizzy Cook: Managing Migraine with More Than 90 Comforting Recipes and Lifestyle Tips. Her articles and recipes have been featured by Healthline, Parade, mindbodygreen, Today, Good Morning Texas, the Vestibular Disorders Association, and the American Migraine Foundation. Read More

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5 from 7 votes (1 rating without comment)

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10 Comments

  1. Berni says:

    5 stars
    Sensational taste and easy recipe THANK YOU

    1. Alicia says:

      Thanks, berni! I’ll admit it doesn’t look like much but it tastes great!

  2. Brandi Paul says:

    5 stars
    PHENOMENAL RECIPE!!! I have also used this with any white fish in season we catch (crappie, bass, etc.) and it’s been fantastic every time! So easy, so quick and DELICIOUS!

  3. Ayala R Hecht says:

    5 stars
    A gracious hostess made this for me for Thanksgiving – the non VM folks ate it up as well! (Plus their turkey, of course.) She said it was incredibly easy. I’m planning to test drive it myself in a few days, bringing pepitas with me on a visit. Then, onto the home rotation! I couldn’t find my sumac, so we went with lemon juice instead. The recipe is a great addition to my menu. Thank you so much for developing this and all your other great recipes.

    1. Alicia says:

      What a kind friend you have! The lemon is perfect with it.

  4. Miranda says:

    5 stars
    Love love love this recipe! I used trout because it is more readily available as a locally sourced fish but I often use trout for salmon recipes. This was so easy to make and a huge hit with the family. It is now added to our regular rotation. Thanks so much.

  5. Deb Ritter says:

    This sounds absolutely amazing but I cannot eat mustard – Dijon, yellow, brown or spicy. Is there anything that can be substituted for the Dijon? Can you use a lemon butter or lemon mayonnaise glaze?

    1. Alicia says:

      Oh darn! I’d probably try mayonnaise and garlic for sort of an aioli spread but I haven’t tested that yet. If you’re following a migraine diet, lemon isn’t a part of the initial elimination but if you’re not, i would definitely add that!

  6. Jennifer says:

    5 stars
    I have never cooked salmon. It was absolutely amazing!!!!!

  7. Lauren says:

    5 stars
    Salmon is my favorite fish. This is such a fresh take and the crunch is great. I love the mustard flavor in combination with the fish. Will definitely be doing this again.